Month: October 2016

#Demographic inference recently shared papers & #preprints (h/t @AL_Ferchaud & Q. Rougemont)

Ben Sutherland

Uecker H, Setter D, Hermisson J (2016) Adaptive gene introgression after secondary contact. Journal of Mathematical Biology, 1–58.
http://link.springer.com/article/10.1007/s00285-014-0802-y

RingbauerH, Coop G, Barton N (2016) Inferring recent demography from isolation by distance of long shared sequence blocks. pre-print BioRxiv.
http://biorxiv.org/content/early/2016/09/23/076810

Beeravolu C, Hickerson M, Frantz L, Lohse K (2016) Approximate Likelihood Inference of Complex Population Histories and Recombination from Multiple Genomes. pre-print BioRxiv.
http://biorxiv.org/content/early/2016/09/28/077958

Meyer BS, Matschiner M, Salzburger W (2016) Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes. Systematic biology.
http://sysbio.oxfordjournals.org/content/early/2016/09/23/sysbio.syw069

#Demographic inference recently shared papers & #preprints (h/t @AL_Ferchaud & Q. Rougemont)

Recently shared #genomic #bioinformatics tools: multiQC, GenVisR (h/t @eric_normandeau )

Ben Sutherland

MultiQC

Ewels P, Magnusson M, Lundin S, Käller M (2016) MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics, 32, 3047–3048.

http://bioinformatics.oxfordjournals.org/content/early/2016/06/15/bioinformatics.btw354.full.pdf+html

More information on the MultiQC website: http://multiqc.info

GenVisR

Skidmore ZL, Wagner AH, Lesurf R et al. (2016) GenVisR: Genomic Visualizations in R. Bioinformatics, 32, 3012–3014.

http://bioinformatics.oxfordjournals.org/content/32/19/3012

More information via Bioconductor: https://bioconductor.org/packages/release/bioc/html/GenVisR.html

Recently shared #genomic #bioinformatics tools: multiQC, GenVisR (h/t @eric_normandeau )